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Structure

Three dimensional structures

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Select item 1707241.

Molecular Structure Image for 6IFO

Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex[RNA BINDING PROTEIN/RNA]

Taxonomy:: Streptococcus pyogenes serotype M1, Streptococcus pyogenes M1 GAS, Listeria monocytogenes

Proteins:: 2
Nucleic acids:: (RNA)
modified:: 2023-11-24

MMDB ID:: 170724
PDB ID:: 6IFO

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 1522882.

Molecular Structure Image for 5VW1

Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex[HYDROLASE]

Taxonomy:: Streptococcus pyogenes serotype M1, Listeria monocytogenes, Listeria monocytogenes M7

Proteins:: 2
Nucleic acids:: (RNA)
Chemicals:: 6
modified:: 2023-10-10

MMDB ID:: 152288
PDB ID:: 5VW1

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 1518303.

Molecular Structure Image for 5XBL

Structure of nuclease in complex with associated protein[HYDROLASE/RNA]

Taxonomy:: Streptococcus pyogenes serotype M1, Listeria monocytogenes, Streptococcus pyogenes

Proteins:: 2
Nucleic acids:: (RNA)
modified:: 2024-03-27

MMDB ID:: 151830
PDB ID:: 5XBL

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 2461554.

Molecular Structure Image for 8SPQ

SpRY-Cas9:gRNA complex targeting TGG PAM DNA[IMMUNE SYSTEM]

Taxonomy:: Streptococcus pyogenes serotype M1, Streptococcus pyogenes, Escherichia phage Lambda

Proteins:: 1
Nucleic acids:: (3 DNA, 1 RNA)
Chemicals:: 4
modified:: 2024-05-15

MMDB ID:: 246155
PDB ID:: 8SPQ

View in iCn3D PubMed Proteins PubChem Compound

Select item 2433765.

Molecular Structure Image for 8UUA

Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr (structure III)[RIBOSOME]

Taxonomy:: Listeria monocytogenes EGD-e, Listeria innocua

Proteins:: 28
Nucleic acids:: (RNA)
Chemicals:: 205
modified:: 2024-05-13

MMDB ID:: 243376
PDB ID:: 8UUA

View in iCn3D PubMed Proteins PubChem Compound

Select item 2433756.

Molecular Structure Image for 8UU9

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)[RIBOSOME]

Taxonomy:: Listeria innocua, Escherichia coli, Escherichia phage T4, Listeria monocytogenes EGD-e

Proteins:: 47
Nucleic acids:: (RNA)
Chemicals:: 480
modified:: 2024-05-13

MMDB ID:: 243375
PDB ID:: 8UU9

View in iCn3D PubMed Proteins PubChem Compound

Select item 2433747.

Molecular Structure Image for 8UU8

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)[RIBOSOME]

Taxonomy:: Listeria innocua, Escherichia coli, Escherichia phage T4, Listeria monocytogenes EGD-e

Proteins:: 49
Nucleic acids:: (RNA)
Chemicals:: 428
modified:: 2024-05-13

MMDB ID:: 243374
PDB ID:: 8UU8

View in iCn3D PubMed Proteins PubChem Compound

Select item 2433738.

Molecular Structure Image for 8UU7

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)[RIBOSOME]

Taxonomy:: Listeria innocua, Escherichia coli, Listeria monocytogenes EGD-e

Proteins:: 48
Nucleic acids:: (RNA)
Chemicals:: 397
modified:: 2024-05-13

MMDB ID:: 243373
PDB ID:: 8UU7

View in iCn3D PubMed Proteins PubChem Compound

Select item 2286669.

Molecular Structure Image for 8BUU

ARE-ABCF VmlR2 bound to a 70S ribosome[RIBOSOME]

Taxonomy:: Bacillus subtilis subsp. subtilis str. 168, Neobacillus vireti

Proteins:: 46
Nucleic acids:: (RNA)
Chemicals:: 107
modified:: 2023-06-06

MMDB ID:: 228666
PDB ID:: 8BUU

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 21924110.

Molecular Structure Image for 7V59

Cryo-EM structure of spyCas9-sgRNA-DNA dimer[RNA BINDING PROTEIN/RNA/DNA]

Taxonomy:: Streptococcus pyogenes serotype M1, Streptococcus pyogenes

Proteins:: 2
Nucleic acids:: (2 DNA, 2 RNA)
modified:: 2023-03-01

MMDB ID:: 219241
PDB ID:: 7V59

View in iCn3D Similar Structures PubMed Proteins

Select item 21457511.

Molecular Structure Image for 7S3H

Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, open-protein/linear-DNA conformation[HYDROLASE/RNA/DNA]

Taxonomy:: synthetic construct, Streptococcus pyogenes serotype M1, Streptococcus pyogenes

Proteins:: 1
Nucleic acids:: (2 DNA, 1 RNA)
modified:: 2022-04-20

MMDB ID:: 214575
PDB ID:: 7S3H

View in iCn3D Similar Structures PubMed Proteins

Select item 21457412.

Molecular Structure Image for 7S38

Cas9:sgRNA:DNA (S. pyogenes) forming a 3-base-pair R-loop[HYDROLASE/RNA/DNA]

Taxonomy:: synthetic construct, Streptococcus pyogenes serotype M1, Streptococcus pyogenes

Proteins:: 1
Nucleic acids:: (2 DNA, 1 RNA)
modified:: 2022-04-20

MMDB ID:: 214574
PDB ID:: 7S38

View in iCn3D Similar Structures PubMed Proteins

Select item 21457313.

Molecular Structure Image for 7S37

Cas9:sgRNA (S. pyogenes) in the open-protein conformation[HYDROLASE/RNA]

Taxonomy:: Streptococcus pyogenes serotype M1, Streptococcus pyogenes

Proteins:: 1
Nucleic acids:: (RNA)
modified:: 2022-04-20

MMDB ID:: 214573
PDB ID:: 7S37

View in iCn3D Similar Structures PubMed Proteins

Select item 21457214.

Molecular Structure Image for 7S36

Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, closed-protein/bent-DNA conformation[HYDROLASE/RNA/DNA]

Taxonomy:: synthetic construct, Streptococcus pyogenes serotype M1, Streptococcus pyogenes

Proteins:: 1
Nucleic acids:: (2 DNA, 1 RNA)
modified:: 2022-04-20

MMDB ID:: 214572
PDB ID:: 7S36

View in iCn3D Similar Structures PubMed Proteins

Select item 21138315.

Molecular Structure Image for 7P48

Staphylococcus aureus ribosome in complex with Sal(B)[RIBOSOMAL PROTEIN]

Taxonomy:: Staphylococcus aureus, Mammaliicoccus lentus

Proteins:: 48
Nucleic acids:: (RNA)
Chemicals:: 7
modified:: 2022-05-01

MMDB ID:: 211383
PDB ID:: 7P48

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 20170616.

Molecular Structure Image for 7NHL

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus[RIBOSOME]

Taxonomy:: Staphylococcus haemolyticus, Staphylococcus aureus subsp. aureus NCTC 8325

Proteins:: 48
Nucleic acids:: (RNA)
Chemicals:: 162
modified:: 2024-05-06

MMDB ID:: 201706
PDB ID:: 7NHL

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 19469517.

Molecular Structure Image for 6WVJ

Cryo-EM structure of Bacillus subtilis RNA Polymerase elongation complex[TRANSCRIPTION/DNA/RNA]

Taxonomy:: Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis, Escherichia coli BL21(DE3)

Proteins:: 5
Nucleic acids:: (2 DNA, 1 RNA)
Chemicals:: 3
modified:: 2022-11-23

MMDB ID:: 194695
PDB ID:: 6WVJ

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 19341618.

Molecular Structure Image for 6TPQ

RNase M5 bound to 50S ribosome with precursor 5S rRNA[RIBOSOMAL PROTEIN]

Taxonomy:: Bacillus subtilis subsp. subtilis str. 168, Geobacillus stearothermophilus

Proteins:: 29
Nucleic acids:: (RNA)
Chemicals:: 222
modified:: 2022-11-13

MMDB ID:: 193416
PDB ID:: 6TPQ

View in iCn3D Similar Structures PubMed Proteins Conserved Domains PubChem Compound

Select item 18877919.

Molecular Structure Image for 6VRB

Cryo-EM structure of AcrVIA1-Cas13(crRNA) complex[IMMUNE SYSTEM]

Taxonomy:: Listeria seeligeri serovar 1/2b str. SLCC3954, Listeria seeligeri

Proteins:: 2
Nucleic acids:: (RNA)
modified:: 2024-03-06

MMDB ID:: 188779
PDB ID:: 6VRB

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

Select item 18016120.

Molecular Structure Image for 6RJG

Cryo-EM structure of St1Cas9-sgRNA-AcrIIA6-tDNA59-ntPAM complex[HYDROLASE]

Taxonomy:: Streptococcus phage D1811, Streptococcus thermophilus DGCC 7710, Streptococcus thermophilus, Brussowvirus bv2972

Proteins:: 3
Nucleic acids:: (2 DNA, 1 RNA)
modified:: 2020-01-12

MMDB ID:: 180161
PDB ID:: 6RJG

View in iCn3D Similar Structures PubMed Proteins Conserved Domains

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Protein Domain Families

Families (330)
Structures with functionally specific protein families
Superfamilies (369)
Structures with evolutionary related protein superfamilies

Complexes

Protein-Protein (208)
Structures containing multiple proteins
Protein-DNA (195)
Structures containing proteins and DNA
Protein-RNA (430)
Structures containing proteins and RNA
Protein-Chemical (306)
Structures containing proteins and chemicals

Literature

PubMed (430)
Structures with corresponding literature
PMC (187)
Structures with corresponding free full text literature

Taxonomy (430)
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Structure
Gene Links for GEO Profiles (Select 123691293) (1)
Gene
HLA-DMB major histocompatibility complex, class II, DM beta [Homo sapiens]
HLA-DMB major histocompatibility complex, class II, DM beta [Homo sapiens]
Gene ID:3109

Gene
Gene Links for Nucleotide (Select 2678969390) (0)
Gene
transient receptor potential cation channel subfamily M member 3 isoform r [Homo...
transient receptor potential cation channel subfamily M member 3 isoform r [Homo sapiens]
gi|1480771435|ref|NP_001353079.1|

Protein

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